##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane2_Index18_2.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	19210424	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	31.89036572019441	33.0	31.0	34.0	30.0	34.0
2	31.96804713940723	33.0	31.0	34.0	30.0	34.0
3	32.01413008895587	34.0	31.0	34.0	30.0	34.0
4	35.47587231807065	37.0	35.0	37.0	33.0	37.0
5	35.4759126086962	37.0	35.0	37.0	33.0	37.0
6	35.47242320107042	37.0	35.0	37.0	33.0	37.0
7	35.380335228415575	37.0	35.0	37.0	33.0	37.0
8	35.37802773119427	37.0	35.0	37.0	33.0	37.0
9	36.890359890026375	39.0	37.0	39.0	33.0	39.0
10-14	37.28514149401387	39.2	37.2	39.4	33.0	39.4
15-19	38.32161464005168	40.0	38.0	41.0	33.0	41.0
20-24	38.1331297320663	40.0	38.0	41.0	33.0	41.0
25-29	38.034228083669575	40.0	38.0	41.0	33.0	41.0
30-34	37.9246333448965	40.0	37.6	41.0	32.8	41.0
35-39	37.68802334607502	40.0	37.0	41.0	31.8	41.0
40-44	37.29586260042986	39.4	36.2	41.0	31.0	41.0
45-49	36.8544343841656	39.0	35.0	40.6	30.4	41.0
50-54	36.009010170728146	38.0	34.4	40.0	29.4	40.6
55-59	35.8636309432837	37.8	34.2	40.0	29.0	41.0
60-64	35.33541127462881	36.8	34.0	40.0	28.4	41.0
65-69	34.843316743034926	35.6	34.0	39.2	28.4	41.0
70-74	34.0330271002868	35.0	33.2	37.8	27.8	40.2
75-79	33.16188633837546	35.0	33.0	36.4	26.6	39.0
80-84	32.33183914108299	35.0	32.6	35.4	25.6	37.2
85-89	31.45951958166046	35.0	32.0	35.0	24.4	36.2
90	30.939711793971856	35.0	32.0	35.0	23.0	36.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
9	1.0
10	195.0
11	1747.0
12	5211.0
13	10416.0
14	16962.0
15	23509.0
16	29417.0
17	35038.0
18	40990.0
19	47345.0
20	56603.0
21	67354.0
22	79348.0
23	96425.0
24	118967.0
25	145591.0
26	180389.0
27	222095.0
28	272645.0
29	330211.0
30	407855.0
31	509586.0
32	644424.0
33	833861.0
34	1128805.0
35	1616304.0
36	2460667.0
37	3563551.0
38	3921834.0
39	2272798.0
40	70280.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	23.746953162889696	11.799812165004534	9.336479926244225	55.11675474586155
2	21.248468330329814	18.510848770365573	36.807561147842435	23.43312175146218
3	25.474211159204756	20.85678270474481	22.181932201583244	31.48707393446719
4	27.736941065392056	27.00112319595167	18.830304686154367	26.43163105250191
5	29.4854330820022	29.386313515090983	21.412738510861193	19.715514892045626
6	24.684761705675808	32.054189278599964	21.80565645907462	21.45539255664961
7	21.856259326564953	18.64377627773125	36.88892007344136	22.61104432226244
8	21.560359657282696	21.887486378851577	29.216056891277052	27.33609707258867
9	21.73334066528716	20.82706526061496	31.53355605360437	25.906038020493504
10-14	24.751042054500882	25.89655430726379	24.439539558106866	24.91286408012846
15-19	25.160843323157696	24.87603200976634	24.781906987223767	25.181217679852193
20-24	24.929726688064317	25.126535776353055	25.20443444028122	24.739303095301405
25-29	24.74208544950655	25.149800661893458	25.157458659570665	24.95065522902933
30-34	24.823458784272916	25.06186395835568	25.06202845900859	25.052648798362814
35-39	24.80864963644813	25.24282332997614	25.03609541965718	24.91243161391855
40-44	24.8012165374755	25.03696908913006	25.21030173180107	24.951512641593368
45-49	24.72163970729919	25.11104955372037	25.09824557479724	25.0690651641832
50-54	24.769236367547396	25.196210686086793	25.1546365776877	24.87991636867811
55-59	24.781096198482135	25.13163171983212	25.087884796812528	24.99938728487322
60-64	24.67371326979387	25.143846955604165	25.21485143280952	24.967588341792442
65-69	24.7063880371553	25.254397275265077	25.23373029313454	24.805484394445084
70-74	24.743436824246075	25.202153050968988	25.105129539448516	24.94928058533642
75-79	24.759067261629024	25.125384407604567	25.199887789964638	24.915660540801774
80-84	24.661881041679585	25.26784860183292	25.228398960714195	24.841871395773303
85-89	24.796001325301127	25.235929753043564	25.138694570063386	24.829374351591927
90	24.49680284079025	25.32888048256037	25.34789675263742	24.826419924011965
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	78.86370790875125
2	44.681590081791995
3	56.961285093671954
4	54.168572117893966
5	49.20094797404782
6	46.14015426232542
7	44.4673036488274
8	48.89645672987137
9	47.63937868578066
10-14	49.66390613462934
15-19	50.34206100300989
20-24	49.66902978336572
25-29	49.69274067853588
30-34	49.87610758263573
35-39	49.72108125036668
40-44	49.75272917906887
45-49	49.79070487148239
50-54	49.6491527362255
55-59	49.78048348335536
60-64	49.64130161158631
65-69	49.51187243160039
70-74	49.69271740958249
75-79	49.674727802430795
80-84	49.50375243745289
85-89	49.62537567689305
90	49.32322276480221
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	8.0
1	13.0
2	20.0
3	23.5
4	27.5
5	39.5
6	49.0
7	62.5
8	85.0
9	124.0
10	154.0
11	173.0
12	227.5
13	331.0
14	467.5
15	696.5
16	1156.0
17	1860.0
18	2996.5
19	5056.5
20	6385.0
21	8569.0
22	14185.0
23	22666.0
24	34643.5
25	51179.0
26	72888.0
27	100379.5
28	131116.5
29	164228.0
30	181992.0
31	198928.5
32	235631.5
33	278156.0
34	323738.5
35	366905.5
36	410032.0
37	460430.0
38	505616.5
39	541651.5
40	560114.0
41	572544.0
42	598519.5
43	624893.5
44	641197.0
45	648087.5
46	650053.0
47	648011.0
48	649606.5
49	651049.5
50	650305.0
51	645972.0
52	641925.5
53	635211.5
54	633016.5
55	635617.0
56	629806.5
57	619157.0
58	601978.0
59	579805.5
60	567768.0
61	553932.0
62	524020.5
63	485908.5
64	439920.0
65	391320.5
66	341715.5
67	290978.5
68	243746.5
69	198953.5
70	175613.0
71	154754.5
72	117164.5
73	85927.0
74	58787.0
75	37030.0
76	22104.5
77	12185.0
78	5926.0
79	2669.5
80	1555.0
81	1161.5
82	571.0
83	287.0
84	174.0
85	112.5
86	67.0
87	48.5
88	37.0
89	30.5
90	27.0
91	20.5
92	14.5
93	12.0
94	8.0
95	8.5
96	8.0
97	4.0
98	2.5
99	3.5
100	4.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.2879374239735677
2	0.21759019998725693
3	0.2741272134337066
4	0.29693774588213145
5	0.2536018986358656
6	0.16820555340163235
7	0.21545073653762145
8	0.24096813271794523
9	0.22478421090549588
10-14	0.1991116906113056
15-19	0.17374317193623628
20-24	0.20223395381590742
25-29	0.03628654942753996
30-34	0.004028021453352617
35-39	0.0048046831241205295
40-44	0.0094167624827021
45-49	0.012141324939001868
50-54	0.007043051210113842
55-59	0.004395530260029659
60-64	0.010711892668272183
65-69	0.005412686362362434
70-74	1.4991860668978467E-4
75-79	1.0931565071130134E-4
80-84	0.003210756826606222
85-89	0.0015574877472772075
90	0.002904673004614578
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	1.9210424E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	52.740304350329104
#Duplication Level	Relative count
1	100.0
2	29.91371434372145
3	15.43092071870876
4	9.27621561262816
5	6.346563800629378
6	4.690894325449193
7	3.5986194294995433
8	2.965181199878185
9	2.3591513551923664
10++	28.443812810882143
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
CCAGG	4192755	2.616352	5.491094	1
CCTGG	4171500	2.5815687	6.0140033	1
CTTCT	4192120	2.5146012	6.128254	1
CTGGA	3907290	2.4516487	9.5339155	1
TCCAG	3850290	2.3654413	6.12957	2
CTGCT	3805740	2.3187428	5.465602	1
CTCCT	3862425	2.304144	8.60191	1
CAGGA	3560445	2.2526417	5.5910892	1
CTGGG	3558665	2.2492745	8.828924	1
CTTCA	3646255	2.2054017	6.3938484	1
CTCCA	3612720	2.173147	9.033147	1
CCCAG	3525170	2.153837	7.5570335	1
CAGAA	3301215	2.073428	5.1146317	1
CTCTG	3276505	1.9962932	6.884711	1
CTGCA	3216435	1.9760296	5.1860576	1
CTTCC	3251895	1.9399298	5.184899	1
CTGGC	3061495	1.8946326	5.928664	1
TGGAA	2930665	1.864404	5.446485	2
CTGAA	2939825	1.8311813	5.9865904	1
CTTTT	3002730	1.8110802	5.269214	1
CTGAG	2754050	1.7280426	5.401831	1
CTCAG	2806745	1.7243351	6.909273	1
CTTTG	2773510	1.6991398	5.4627113	1
CTGGT	2700810	1.6806272	5.5430045	1
CTTGG	2626745	1.634539	5.7516284	1
CTCCC	2580815	1.5311598	5.6092744	1
>>END_MODULE
